Chromosome analysis is essential for diagnosing genetic disorders. For hematologic malignancies, identification of somatic clonal aberrations by karyotype analysis remains the standard of care. However, karyotyping is costly and time-consuming because of the largely manual process and the expertise required in identifying and annotating aberrations. Efforts to automate karyotype analysis to date fell short in aberration detection. Using a training set of ~10k patient specimens and ~50k karyograms from over 5 years from the Fred Hutchinson Cancer Center, we created a labeled set of images representing individual chromosomes. These individual chromosomes were used to train and assess deep learning models for classifying the 24 human chromosomes and identifying chromosomal aberrations. The top-accuracy models utilized the recently introduced Topological Vision Transformers (TopViTs) with 2-level-block-Toeplitz masking, to incorporate structural inductive bias. TopViT outperformed CNN (Inception) models with >99.3% accuracy for chromosome identification, and exhibited accuracies >99% for aberration detection in most aberrations. Notably, we were able to show high-quality performance even in "few shot" learning scenarios. Incorporating the definition of clonality substantially improved both precision and recall (sensitivity). When applied to "zero shot" scenarios, the model captured aberrations without training, with perfect precision at >50% recall. Together these results show that modern deep learning models can approach expert-level performance for chromosome aberration detection. To our knowledge, this is the first study demonstrating the downstream effectiveness of TopViTs. These results open up exciting opportunities for not only expediting patient results but providing a scalable technology for early screening of low-abundance chromosomal lesions.

组织病理学图像包含丰富的表型信息和病理模式，这是疾病诊断的黄金标准，对于预测患者预后和治疗结果至关重要。近年来，在临床实践中迫切需要针对组织病理学图像的计算机自动化分析技术，而卷积神经网络代表的深度学习方法已逐渐成为数字病理领域的主流。但是，在该领域获得大量细粒的注释数据是一项非常昂贵且艰巨的任务，这阻碍了基于大量注释数据的传统监督算法的进一步开发。最新的研究开始从传统的监督范式中解放出来，最有代表性的研究是基于弱注释，基于有限的注释的半监督学习范式以及基于自我监督的学习范式的弱监督学习范式的研究图像表示学习。这些新方法引发了针对注释效率的新自动病理图像诊断和分析。通过对130篇论文的调查，我们对从技术和方法论的角度来看，对计算病理学领域中有关弱监督学习，半监督学习以及自我监督学习的最新研究进行了全面的系统综述。最后，我们提出了这些技术的关键挑战和未来趋势。

We consider a sequential decision making problem where the agent faces the environment characterized by the stochastic discrete events and seeks an optimal intervention policy such that its long-term reward is maximized. This problem exists ubiquitously in social media, finance and health informatics but is rarely investigated by the conventional research in reinforcement learning. To this end, we present a novel framework of the model-based reinforcement learning where the agent's actions and observations are asynchronous stochastic discrete events occurring in continuous-time. We model the dynamics of the environment by Hawkes process with external intervention control term and develop an algorithm to embed such process in the Bellman equation which guides the direction of the value gradient. We demonstrate the superiority of our method in both synthetic simulator and real-world problem.

本文回顾了关于压缩视频质量增强质量的第一个NTIRE挑战，重点是拟议的方法和结果。在此挑战中，采用了新的大型不同视频（LDV）数据集。挑战有三个曲目。Track 1和2的目标是增强HEVC在固定QP上压缩的视频，而Track 3旨在增强X265压缩的视频，以固定的位速率压缩。此外，轨道1和3的质量提高了提高保真度（PSNR）的目标，以及提高感知质量的2个目标。这三个曲目完全吸引了482个注册。在测试阶段，分别提交了12个团队，8支球队和11支球队，分别提交了轨道1、2和3的最终结果。拟议的方法和解决方案衡量视频质量增强的最先进。挑战的首页：https：//github.com/renyang-home/ntire21_venh

Implicit regularization is an important way to interpret neural networks. Recent theory starts to explain implicit regularization with the model of deep matrix factorization (DMF) and analyze the trajectory of discrete gradient dynamics in the optimization process. These discrete gradient dynamics are relatively small but not infinitesimal, thus fitting well with the practical implementation of neural networks. Currently, discrete gradient dynamics analysis has been successfully applied to shallow networks but encounters the difficulty of complex computation for deep networks. In this work, we introduce another discrete gradient dynamics approach to explain implicit regularization, i.e. landscape analysis. It mainly focuses on gradient regions, such as saddle points and local minima. We theoretically establish the connection between saddle point escaping (SPE) stages and the matrix rank in DMF. We prove that, for a rank-R matrix reconstruction, DMF will converge to a second-order critical point after R stages of SPE. This conclusion is further experimentally verified on a low-rank matrix reconstruction problem. This work provides a new theory to analyze implicit regularization in deep learning.

One of the key challenges in deploying RL to real-world applications is to adapt to variations of unknown environment contexts, such as changing terrains in robotic tasks and fluctuated bandwidth in congestion control. Existing works on adaptation to unknown environment contexts either assume the contexts are the same for the whole episode or assume the context variables are Markovian. However, in many real-world applications, the environment context usually stays stable for a stochastic period and then changes in an abrupt and unpredictable manner within an episode, resulting in a segment structure, which existing works fail to address. To leverage the segment structure of piecewise stable context in real-world applications, in this paper, we propose a \textit{\textbf{Se}gmented \textbf{C}ontext \textbf{B}elief \textbf{A}ugmented \textbf{D}eep~(SeCBAD)} RL method. Our method can jointly infer the belief distribution over latent context with the posterior over segment length and perform more accurate belief context inference with observed data within the current context segment. The inferred belief context can be leveraged to augment the state, leading to a policy that can adapt to abrupt variations in context. We demonstrate empirically that SeCBAD can infer context segment length accurately and outperform existing methods on a toy grid world environment and Mujuco tasks with piecewise-stable context.

With the ever-growing model size and the limited availability of labeled training data, transfer learning has become an increasingly popular approach in many science and engineering domains. For classification problems, this work delves into the mystery of transfer learning through an intriguing phenomenon termed neural collapse (NC), where the last-layer features and classifiers of learned deep networks satisfy: (i) the within-class variability of the features collapses to zero, and (ii) the between-class feature means are maximally and equally separated. Through the lens of NC, our findings for transfer learning are the following: (i) when pre-training models, preventing intra-class variability collapse (to a certain extent) better preserves the intrinsic structures of the input data, so that it leads to better model transferability; (ii) when fine-tuning models on downstream tasks, obtaining features with more NC on downstream data results in better test accuracy on the given task. The above results not only demystify many widely used heuristics in model pre-training (e.g., data augmentation, projection head, self-supervised learning), but also leads to more efficient and principled fine-tuning method on downstream tasks that we demonstrate through extensive experimental results.

Conversational recommender systems (CRSs) often utilize external knowledge graphs (KGs) to introduce rich semantic information and recommend relevant items through natural language dialogues. However, original KGs employed in existing CRSs are often incomplete and sparse, which limits the reasoning capability in recommendation. Moreover, only few of existing studies exploit the dialogue context to dynamically refine knowledge from KGs for better recommendation. To address the above issues, we propose the Variational Reasoning over Incomplete KGs Conversational Recommender (VRICR). Our key idea is to incorporate the large dialogue corpus naturally accompanied with CRSs to enhance the incomplete KGs; and perform dynamic knowledge reasoning conditioned on the dialogue context. Specifically, we denote the dialogue-specific subgraphs of KGs as latent variables with categorical priors for adaptive knowledge graphs refactor. We propose a variational Bayesian method to approximate posterior distributions over dialogue-specific subgraphs, which not only leverages the dialogue corpus for restructuring missing entity relations but also dynamically selects knowledge based on the dialogue context. Finally, we infuse the dialogue-specific subgraphs to decode the recommendation and responses. We conduct experiments on two benchmark CRSs datasets. Experimental results confirm the effectiveness of our proposed method.

With increasing privacy concerns on data, recent studies have made significant progress using federated learning (FL) on privacy-sensitive natural language processing (NLP) tasks. Much literature suggests fully fine-tuning pre-trained language models (PLMs) in the FL paradigm can mitigate the data heterogeneity problem and close the performance gap with centralized training. However, large PLMs bring the curse of prohibitive communication overhead and local model adaptation costs for the FL system. To this end, we introduce various parameter-efficient tuning (PETuning) methods into federated learning. Specifically, we provide a holistic empirical study of representative PLMs tuning methods in FL. The experimental results cover the analysis of data heterogeneity levels, data scales, and different FL scenarios. Overall communication overhead can be significantly reduced by locally tuning and globally aggregating lightweight model parameters while maintaining acceptable performance in various FL settings. To facilitate the research of PETuning in FL, we also develop a federated tuning framework FedPETuning, which allows practitioners to exploit different PETuning methods under the FL training paradigm conveniently. The source code is available at \url{https://github.com/iezhuozhuo/FedETuning/tree/deltaTuning}.

Over the past few years, developing a broad, universal, and general-purpose computer vision system has become a hot topic. A powerful universal system would be capable of solving diverse vision tasks simultaneously without being restricted to a specific problem or a specific data domain, which is of great importance in practical real-world computer vision applications. This study pushes the direction forward by concentrating on the million-scale multi-domain universal object detection problem. The problem is not trivial due to its complicated nature in terms of cross-dataset category label duplication, label conflicts, and the hierarchical taxonomy handling. Moreover, what is the resource-efficient way to utilize emerging large pre-trained vision models for million-scale cross-dataset object detection remains an open challenge. This paper tries to address these challenges by introducing our practices in label handling, hierarchy-aware loss design and resource-efficient model training with a pre-trained large model. Our method is ranked second in the object detection track of Robust Vision Challenge 2022 (RVC 2022). We hope our detailed study would serve as an alternative practice paradigm for similar problems in the community. The code is available at https://github.com/linfeng93/Large-UniDet.